![]() ![]() Choose the starting and ending times if you’d like to analyze a small time segement of your data. Start and End: These parameters allow you to analyze a range of your data. Two additional parameters, the feedback resistance (Rfb) in Ohms and capacitance (Cfb) in Farads are required to appropriately convert the measurements to ionic current. Rfb & Cfb: MOSAIC supports the QUB QDF file format used by the Electronic Biosciences Nanopatch system. Click the “…” icon to navigate to the directory.įile Type: The GUI is natively compatible with either ABF or QDF Files, this field is automatically populated based on the files in the directory you’ve chosen.The Rfb and Cfb parameters are needed to correctly analyze QDF files (see qdfTrajIO for more information) Path: Allows user to set the directory containing files to analyze. Overview of Panels A & B: (A) Analysis setup panel (B) Trajectory viewer panel ¶ 4.2.1. ![]() Panels A & B: Analysis Setup and Trajectory Viewer ¶ This panel is active only if “Write Events to Disk” is enabled in the Analysis Setup.Ĥ.2. Trajectory Viewer: This panel shows a snippet of the ionic current time-series and an all points histogram, used to set the baseline and threshold parameters found in Panel A: Analysis Setup.īlockade Depth Histogram: Once the data processing has started, this panel shows a live blockade depth histogram a query can be defined to restrict the histogram to data which fulfills a user-defined criteria.Īnalysis Statistics: Displays live statistics about the data processed.Įvent Viewer: Displays the partitioned events and their fit. Briefly, these are:Īnalysis Setup: This panel is used to set up the analysis parameters. The main interface consists of five panels which we go over in detail later in this document. Primary panels in MOSAIC: (A)Analysis Setup (B) Trajectory Viewer (C) Live Blockade Depth Histogram (D) Live Analysis Statistics (E) Event Viewer. If you don’t see the path to the MOSAIC installation in PYTHONPATH, consult the operating-system specific instructions ( OSX or Ubuntu) to help resolve this issue. To fix this error, first type echo $PYTHONPATH in the terminal. Having trobule getting the GUI to start? Frequently, this arises because your PYTHONPATH environment variable is set up incorrectly. ![]()
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